| Del. No. |
Deliverable name |
WP No. |
Nature |
Delivery date |
0.1 |
First Report on Data Extraction |
0 |
R |
M3 |
8.1 |
Project Handbook |
8 |
R |
M3 |
2.1 |
Identification and organization of relevant (textual) |
2 |
O |
M4 |
0.2 |
First Reoirt ib Data Ckassification |
0 |
R |
M5 |
1.1 |
Database specification |
1 |
R |
M5 |
1.2 |
Predictive system requirements |
1 |
R |
M6 |
2.2 |
First version of the common ontology |
2 |
O |
M6 |
0.3 |
Feasibility report on data gathering and processing |
0 |
R |
M9 |
1.3 |
Procedures document for maintining security of data, specially structural data |
1 |
R |
M11 |
1.4 |
Functioning database management system containing the primary dataset |
1 |
O |
M12 |
2.4 |
Development and validation of the semi-automated data extraction application |
2 |
R |
M12 |
3.1 |
Review of available approaches to predict pure-chemistry drug toxicities |
3 |
O |
M12 |
3.2 |
Report on transporters and their endogenous ligands related to drug toxicity |
3 |
R |
M12 |
3.3 |
Report on the performance of ligand-based off-target pharmacology methods to predict the binding and functional profiles of compounds |
3 |
R |
M12 |
3.4 |
In silico tools for prediction of metabolite structures |
3 |
O |
M12 |
3.5 |
Predictive in silico affinity models for CYP off-targets |
3 |
O |
M12 |
4.1 |
Progress report on QSAR modelling |
4 |
R |
M12 |
4.2 |
Report on requirement and specifications for developing and validating QSAR models |
4 |
R |
M12 |
8.2 |
Communication Plan |
8 |
R |
M12 |
8.3 |
Technical and Financial Annual Reports #1 |
8 |
R |
M12 |
0.4 |
Final report on data gathering and processing (first document) |
8 |
R |
M12 > M18 |
2.6 |
Development and validation of the text mining application using the EMEA EPAR dataset |
2 |
R |
M18 |
3.6 |
Report describing the proposed strategy for the generation of structure/sub-structure based categories to predict drug toxicities |
3 |
R |
M18 |
3.7 |
Report on ligand-based approaches to predict off-target pharmacology of drug candidates and their matabolites |
3 |
R |
M18 |
3.8 |
In silico models for prediction of interaction profiles of compounds and their metabolites with transporters related to drug toxicity |
3 |
O |
M18 |
4.3 |
Progress report on other mathematical and statistical analysis |
4 |
R |
M18 |
5.1 |
In silico chemogenomics |
5 |
O |
M18 |
6.1 |
Detailed description of the integrative software specifications and architecture |
6 |
O |
M18 |
5.2 |
Interface between databases |
5 |
O |
M21 |
2.3 |
Consolidated and validated version of the common ontology |
2 |
O |
M12 > M24 |
3.9 |
Predictive in silico affinity models for selected off-targets |
3 |
O |
M24 |
3.10 |
In silico models for prediction of compounds that can undergo phase II metabolism |
3 |
O |
M24 |
5.3 |
Chemical pharmaco-toxicological network |
5 |
O |
M24 |
8.4 |
Technical and Financial Annual Reports #2 |
8 |
R |
M24 |
6.2 |
Release of the system's prototype application |
6 |
P |
M26 |
0.4 |
Final report on data gathering and processing (second document) |
0 |
R |
M12 > M30 |
1.5 |
Interim report on database development, management and updates to data content |
1 |
R |
M30 |
2.7 |
Updates and expansions of the text mining tools and the datasets |
2 |
O |
M30 |
3.11 |
Report describing reactivity-based approaches to predict drug toxicity |
3 |
R |
M24 > M30 |
3.12 |
In silico models for prediction of different animal in vivo ADME parameters |
3 |
O |
M30 |
4.4 |
Repository for QSAR and predictive models, and tools for their development |
4 |
O |
M30 |
5.4 |
Inter-species toxicological profiles |
5 |
R |
M30 |
8.5 |
Interim Report on Dissemination Activities and use of Results |
8 |
R |
M30 |
2.5 |
Updates and expansions of the ontology |
2 |
O |
M18 > M36 |
5.5 |
Inter-individuals toxicological network |
5 |
R |
M36 |
8.6 |
Technical and Financial Annual Reports #3 |
8 |
R |
M36 |
6.3 |
Release of the first version of the system |
6 |
O |
M38 |
3.13 |
Framework and protocols for predicting structure-based affinity and selectivity between CYPs and other selected off-targets |
3 |
R |
M42 |
3.14 |
Report describing the relationship of ligand-transporter interaction profiles and toxicity parameters |
3 |
R |
M42 |
5.6 |
Tissue-protein association network |
5 |
O |
M42 |
7.1 |
Report on the Verification, Evaluation, Characterisation and Validation of In silico models for Toxicity Prediction |
7 |
R |
M42 |
5.7 |
Biomarkers identification |
5 |
O |
M45 |
7.2 |
Report on the Proposed Workflow for the Verification, Evaluation, Characterisation and Validation of in silico Models for Toxicity Prediction |
7 |
R |
M45 |
7.3 |
Report on the Process of the Verification of in silico Models for Toxicity Prediction |
7 |
R |
M45 |
7.4 |
Report on the Process of the Characterisation of in silico Models for Toxicity Prediction |
7 |
R |
M45 |
6.4 |
Release of the final version of the system |
6 |
O |
M47 |
5.8 |
Integrative systems chemical-biology network |
5 |
O |
M48 |
7.5 |
Report on the Process of the Verification, Evaluation, Characterisation and Validation of an Initial In Silico Model for Toxicity Prediction |
7 |
R |
M48 |
8.7 |
Technical and Financial Annual Reports #4 |
8 |
R |
M48 |
6.5 |
Release of a service pack |
6 |
O |
M59 |
0.4 |
Final report on data gathering and processing (third document) |
0 |
R |
M12 > M60 |
1.6 |
Final Report on database development, management and updates to data content |
1 |
R |
M60 |
7.6 |
Report Summarising the Validation Exercises Undertaken for the In Silico Model for Toxicity Prediction in the eTOX Project |
7 |
R |
M60 |
8.8 |
Final Report on Dissemination Activities and Use of Results |
8 |
R |
M60 |
8.9 |
Technical and Financial Annual Reports |
8 |
R |
M60 |
