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eTOX publications


2012


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2011


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2010


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2009


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Deliverables


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Publications eTOX

 

2012

 

April

 

ARTICLE: The EU-ADR corpus: Annotated drugs, diseases, targets, and their relationships. van Mulligen EM, Fourrier-Reglat A, Gurwitz D, Molokhia M, Nieto A, Trifiro G, Kors JA, Furlong L. J Biomed Inform. 2012 Apr 25 [Epub ahead of print] Partner: FIMIM

 

March

 

ARTICLE: Inroads to Predict in Vivo Toxicology—An Introduction to the eTOX Project. Briggs K, Cases M, Heard D J, Pastor M, Pognan F, Sanz F, Schwab C H, Steger-hartmann T, Sutter A, Watson D K, Wichard J D. Int. J. Mol. Sci. 2012, 13, 3820-3846 Partners: LL, FIMIM, Novartis, BHC, MN

 

ARTICLE: Fingerprint-based in silico models for the prediction of P-glycoprotein substrates and inhibitors. Poongavanam V, Haider N, Ecker GF. Bioorg Med Chem. 2012 Mar 29 [Epub ahead of print] Partner: UNIVIE

 

February

 

ARTICLE: Toxicology Ontology Perspectives. Hardy B, Apic G, Carthew P, Clark D, Cook D, Dix I, Escher S, Hastings J, Heard DJ, Jeliazkova N, Judson P, Matis-Mitchell S, Mitic D, Myatt G, Shah I, Spjuth O, Tcheremenskaia O, Toldo L, Watson D, White A, Yang C. ALTEX. 2012,29(2):139-56 Partners: EMBL, LL, NOVARTIS

 

ARTICLE: Food for Thought... A Toxicology Ontology Roadmap. Hardy B, Apic G, Carthew P, Clark D, Cook D, Dix I, Escher S, Hastings J, Heard DJ, Jeliazkova N, Judson P, Matis-Mitchell S, Mitic D, Myatt G, Shah I, Spjuth O, Tcheremenskaia O, Toldo L, Watson D, White A, Yang C. ALTEX. 2012,29(2):129-37 Partners: EMBL, LL, NOVARTIS

 

ARTICLE: The impact of network biology in pharmacology and toxicology. Panagiotou G, Taboureau O. SAR QSAR Environ Res. 2012;23(3-4):221-35. Epub 2012 Feb 22 Partner: DTU

 

ARTICLE: Toxicogenomics Investigation Under the eTOX Project. Taboureau O, Hersey A, Audouze K, Gautier L, Jacobsen UP, et al. J Pharmacogenom Pharmacoproteomics S7:001 Partners: DTU, EMBL

 

 

2011

 

December

 

ARTICLE: Application of data mining and visualization techniques for the prediction of drug-induced nausea in man. Parkinson J, Muthas D, Clark M, Boyer S, Valentin JP, Ewart L. Toxicological Sciences 126(1), 275–284 (2012). Partner: AZ

 

November

 

POSTER and ORAL COMMUNICATION: Networking drug toxicity events to proteins and drugs. Cases M, Bravo A, Sanz F, Furlong LI. ICREA Conference on Network Medicine Approaches to Human Disease: from Computer to the Clinics. Partner: FIMIM

 

ARTICLE: The IMI eTOX Project. Steger-Hartmann T. AXLR8-2 Workshop Report on a ‘Roadmap to Innovative Toxicity Testing’. Partner: BHC

 

October

 

ARTICLE: A review of the use of in silico methods to predict the chemistry of molecular initiating events related to drug toxicity. Ellison CM, Enoch SJ, Cronin MT. Expert Opin Drug Metab Toxicol. 2011 Dec;7(12):1481-95. Epub 2011 Oct 28 Partner: LJMU

 

ARTICLE: Overview of the BioCreative III Workshop. Arighi CN, Lu Z, Krallinger M, Cohen KB, Wilbur WJ, Valencia A, Hirschman L and Wu CH. BMC Bioinformatics 2011, 12(Suppl 8):S1 Partner: CNIO

 

September

 

ARTICLE: Shaping the future of safer innovative drugs in Europe. Mestres J, Bryant SD, Zamora I & Gasteiger J. Nature Biotechnology. 2011 Sep 8;29:789–790.doi:10.1038/nbt.1973. Partners: CT, IL, LMD, MN

 

August

 

ARTICLE: Application of computational systems biology to explore environmental toxicity hazards. Audouze K, Grandjean P. Environ Health Perspect. 2011 Dec;119(12):1754-9. Epub 2011 Aug 8. Partner: DTU

 

ARTICLE: A review of the electrophilic reaction chemistry involved in covalent protein binding relevant to toxicity. Enoch SJ, Ellison CM, Schultz TW and Cronin MTD. Critical Reviews in Toxicology. 2011 Oct;41(9):783-802. Epub 2011 Aug 2. Partner: LJMU

 

July

 

ARTICLE: Text Mining for Drugs and Chemical Compounds: Methods, Tools and Applications. Krallinger M, Vazquez M Leitner F, Salgado D, Chatr-aryamontri A, Winter A, Perfetto L, Briganti L, Licata L, Iannuccelli M, et al. Mol. Inf. 2011, 30:506 – 19. Partner: CNIO

 

June

 

ARTICLE: Gene-Disease Network Analysis Reveals Functional Modules in Mendelian, Complex and Environmental Diseases. Bauer-Mehren A, Bundschus M, Rautschka M, Mayer MA, Sanz F, et al. PLoS ONE. 2011 Jun 14;6(6): e20284. Partner: FIMIM

 

April

 

ARTICLE: In silico predictions of hERG channel blockers in drug discovery: From ligand-based and target-based approaches to systems chemical biology. Taboureau O and Jørgensen FS. Comb Chem High Throughput Screen. 2011 Jun 1;14(5):375-87 Partner: DTU

 

February

 

DELIVERABLE: Review of available approaches to predict pure-chemistry drug toxicities. Ellison C; Cronin M. Partner: LJMU

 

January

 

ARTICLE: A Multiscale Simulation System for the Prediction of Drug-Induced Cardiotoxicity. Obiol-Pardo C, Gomis-Tena J, Sanz F, Saiz J, Pastor MJ. J Chem Inf Model. 2011 Feb 28;51(2):483-92. Epub 2011 Jan 20 Partner: FIMIM

 

 

2010

 

December

 

ORAL COMUNICATION: The REACH Initiative: Modeling Toxicity and Metabolism in Risk Assessment. Gasteiger, J. 14th December 2010, Korea. Partner: MN

 

ORAL COMUNICATION: Machine Learning in Drug Design: Lessons Learned. Wichard JD. Charting Chemical Space: Challenges and Opportunities for AI and Machine Learning, 11th December, Vancouver, Canada. Partner: BHC